rs52334379 SNP Detail

Summary

• ID
  rs52334379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128534899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AAGAAGAGGA GGAGGAGGAA
  R
  AGGAGGAGCA GGAGGAAGAA GAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145462765	ENSMUSSNP6897569	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss319965307	CHEV_1_130503739	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52334379					SNP	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128534899 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	1103 bp downstream
Rr396265	regulatory region 396265	848 bp downstream
Rr417790	regulatory region 417790	853 bp distal
Rr417791	regulatory region 417791	808 bp proximal
Tssr13482	transcription start site region 13482	812 bp downstream