rs52334877 SNP Detail

Summary

• ID
  rs52334877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164903165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTGAGCC ATCTCTCCAG CTCCTCCAAA TCCTTTTCTT
  ATTCATTTAA AAAATTACAT GTATGTATGT ATGTATGTAT GTATGTATGC ATGTTTGTAC
  R
  CACACACACA CACACACACA CACACACGGA GATTAGATGC TAACTTTTGA GAGTTGGTTC
  TCTCCTTCCA TTTCTGGGCC TTGAAATTCT GGTTATCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148234568	ENSMUSSNP3410868	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320607384	CHEV_2_164886745	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52334877					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164903165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569804	regulatory region 569804			965 bp distal
Rr569805	regulatory region 569805			465 bp proximal
Tssr21704	transcription start site region 21704			1941 bp downstream
Tssr21705	transcription start site region 21705			1314 bp downstream
Tssr21706	transcription start site region 21706			1066 bp upstream