rs52335093 SNP Detail

Summary

• ID
  rs52335093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:3623373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTTCTT TTGTACTTTT
  TTGATTGTAC TTTTCTTTTT TTCTTTTTTG CTATTCAATC AAATAAAGCA ATCTATAGTT
  TTTGAGCCCT TTTCTTTTCT TTGAAGTGGT TTTCACCTGG GCATCAATCT TTTGTTTGGA
  ATTTTGGGGT GAGAGGTGGG ATTAAAGTTC TCCCTGGCAC TGAGATGGGG CCATTTTATG
  Y
  ATCTATTGAT GGATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATGTAT CATTTGTATA TCTGTTATCT ATGTGTCTAT CTATCTATCT ATCTATCTAT
  CTACCTATCT ATGTATCATT TGTATATCTG TTATCTGTCT GTCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145044586	ENSMUSSNP7083869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss325286860	CHEV_17_3573098	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52335093					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:3623373 () rs orientation: forward

Symbol	Name	Function Class
Gm34155	predicted gene, 34155	within coordinates
Rr331141	regulatory region 331141	1773 bp distal