rs52335557 SNP Detail

Summary

• ID
  rs52335557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTAGG ACATAGGGAG
  GGGAGTTAAG AGGGTAGTAG AGGCAGAGAA AGGCAGGAGG GGGAGGGGAG GGGAGGGAGA
  TGAGTAGAGG CTGACAAGAG GGAATGGGGA GAGAGGGGGC AAGAGAAAGC AAGAGAGCAA
  GAGAGGAGCA AGAGAGTGAG GAGGGGGCAA GCAGCCCCTT TTAAGGTGGG GTAGGGCCTA
  Y
  CTTTCTTGTT GCCAGGTAAC TGTGGGGCAG AACTTTGACA ATTGGTATGG GAGGGATTTT
  TTTTTTTAAA ATATGACAAT ACTATTTTGA GTGGGGAGTG AACCTGGTGC AATCATGTTT
  AAGTGGTGAA GCGTCTCAGT TGGTCATTTA AAGTGTCATC GACACTAATG GATTAGGTTT
  GTAACTTTTA CTTTGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957612	CHEV_3_127565187	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52335557					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655918 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	915 bp downstream
Rr584887	regulatory region 584887	579 bp distal
Rr584888	regulatory region 584888	244 bp proximal
Tssr31614	transcription start site region 31614	654 bp downstream