rs52335625 SNP Detail

Summary

• ID
  rs52335625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149416773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTCCC ACAGCACTGA
  ACCCCTCCTA TAAGCAGGTG ACTGACATCA TTTGTAGAAA TGCGAACAGT GGACAACACA
  CCCAGACAAA CCTAGACACA AATTCAGGTC CCATTACCTC CCAGTTATAC AGTCTTTTTT
  AATTTTCTTT TTCTTTTCTT CCTTCCTTCT TTTTTTTTTT TAAAGATTTA TTTATTGAGC
  Y
  GGGCGTGGTG GCATACGCCT TTAATCCCAG CACTCCGGGA GGCAGAGGCA GGCAGATTTC
  TGAGTTCAAG GCCAGCCTGG TCTACAAAGT GAGTTCCAGG ACTGCTAGGG CTATACAGAG
  AAACCCTGTC TCAAAAAACC AAAAAAACCA ACCAACAAAC AAAAAAAACC CCAAAGATTT
  ATTTACTATG TAAGTACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148031415	ENSMUSSNP3366874	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52335625					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149416773 () rs orientation: forward

Symbol	Name	Function Class
Rr604892	regulatory region 604892	1614 bp distal
Ube4b	ubiquitination factor E4B	within coordinates