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rs52335700 SNP Detail
Summary
  • ID
    rs52335700
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr9:44056679 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCTTTGGGT TAGTAGGTTA
    CTTCTGTATA TACCAAATGA CTTGACTCTT TAGAAGTTAA AAGCAGGGTA GTATGTTTGA
    TACGCCTTAA AACTCGGGCC AGGCTCTAGG ATGGGATTCC AATGATCCAG GCAAGCAGAA
    GCAGTTTTAC TTCCCCAACA CCTTAAAAAA AAAGAAAGAA TGAAAGAAAA CCAAACCAAC
    C
    AAACCAAAAA ACCAAAACCA CCACACTTAT TACAGGACTA GAGAAAAAGC AACCAGAGAA
    GATACAGGTA GCCTGTTTAT AAGAAGCACA CAAGAACAAG CTATTTTCGA CACTGAAAAT
    ATCCCTATTC TAGCAAATGT CCCAGTGTAC CTAGGAAAGT AAAGCTAAGG ATATCACTGT
    AGGCTCCCCT TACAGGAAGA                                            
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
DBA/2J
ss136391640 ENSMUSSNP6643550 ENSEMBL ENSEMBL_Sanger f SNP C
SNP Consensus Information
SNP Consensus Type
DBA/2J
rs52335700 SNP C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:44056679 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cbl Casitas B-lineage lymphoma Intron
mRNA-UTR
Noncoding-Transcript-Variant
Rr677565 regulatory region 677565 1076 bp distal
Rr677566 regulatory region 677566 741 bp distal
Rr677567 regulatory region 677567 820 bp distal
Rr677568 regulatory region 677568 1986 bp proximal
Tssr89112 transcription start site region 89112 834 bp upstream
Tssr89113 transcription start site region 89113 649 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory