rs52336048 SNP Detail

Summary

• ID
  rs52336048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4841250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GTATCCTTCA GCAGCCCTAA CCCTGGCCTT AAACAAAATC
  CCTTGACAAC CCTTTTAAGT TCCTCTGTGT GTCTGTCTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTATGTATA GTTGCCAGCT TAGAAATATA AAATCCATTA
  TTTAAAATTA GTTTTCGGGC AGCTAGTAGA GGACACGGGC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148476127	ENSMUSSNP5292679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52336048					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4841250 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	104 bp upstream
Rr407423	regulatory region 407423	697 bp distal
Rr407424	regulatory region 407424	951 bp distal
Tssr5799	transcription start site region 5799	67 bp upstream