rs52336734 SNP Detail

Summary

• ID
  rs52336734
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85567002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGG GGGATCCGAG GAGGTCGGGC
  C
  GCTGGGGGAG GGCAGGGCCT GGCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145395133	ENSMUSSNP1364873	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322752021	CHEV_8_87364272	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52336734					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85567002 () rs orientation: forward

Symbol	Name	Function Class
Calr	calreticulin	1715 bp downstream
Cpgi20722	CpG island 20722	within coordinates
Gm64216	predicted gene, 64216	810 bp downstream
Rad23a	RAD23 homolog A, nucleotide excision repair protein	within coordinates
Rr401026	regulatory region 401026	329 bp upstream
Rr666632	regulatory region 666632	258 bp proximal
Tssr82172	transcription start site region 82172	1784 bp upstream
Tssr82173	transcription start site region 82173	1750 bp upstream
Tssr82174	transcription start site region 82174	1686 bp upstream
Tssr82175	transcription start site region 82175	254 bp downstream