rs52338843 SNP Detail

Summary

• ID
  rs52338843
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:63415704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAGGAAA AAACCCTTAA AAAACAAAAC AAAGGTTAAA
  ACAAATAATC AATAAGACAA AAAACCAAAA TCAAACTAAC AACAACAACA ACAACAACAA
  C
  AAAACCCAAA AAACCAAAAT CAACAAAACA AAAGCATACA CACAAAAAAC ATTGAGTATG
  TTTTGTGTTA GCTAACGACT CCTGGGCTTG GGGCCTAAC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss149154785	ENSMUSSNP4867663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52338843					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63415704 () rs orientation: forward

Symbol	Name	Function Class
Gm71047	predicted gene, 71047	842 bp upstream