rs52338910 SNP Detail

Summary

• ID
  rs52338910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60436954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CACAGTTATC TCACACTCTG AGTTTTATCA GTTCCTATTT
  TGTTTAGTTT TTGTCTTTTG TTTTGGTTGC TGATTTTTTT TCTATTTTTC TTTTTCTTTT
  Y
  TTTTTGTTTT TTCCTTTTTT TTTTTTTTTT TTTTTTTTTG GAGAGGGGTT GGATTTGTTG
  GTTTCATTAA ACATTTAACT ACCTGTAAAA TATAAACATG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135219410	ENSMUSSNP595664	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52338910					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60436954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr577418	regulatory region 577418			374 bp distal
Tssr29294	transcription start site region 29294			1399 bp downstream
Tssr29295	transcription start site region 29295			1277 bp downstream
Tssr29296	transcription start site region 29296			1217 bp downstream
Tssr29297	transcription start site region 29297			1038 bp downstream
Tssr29298	transcription start site region 29298			1012 bp downstream
Tssr29299	transcription start site region 29299			754 bp downstream
Tssr29300	transcription start site region 29300			276 bp downstream
Tssr29301	transcription start site region 29301			80 bp downstream
Tssr29302	transcription start site region 29302			33 bp upstream
Tssr29303	transcription start site region 29303			168 bp upstream
Tssr29304	transcription start site region 29304			543 bp upstream
Tssr29305	transcription start site region 29305			786 bp upstream
Tssr29306	transcription start site region 29306			1701 bp upstream