rs52338923 SNP Detail

Summary

• ID
  rs52338923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107006863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGACACG CATGCACATG GGCACACATA TGCACATGGA
  CACACACTCA CAAAGATACA TATACTCACA CAGGCACACA TACACTCACA GGGACATACA
  Y
  ACACTCACAA ACACACAAGA ACATATAGAC ATACACATAG GCGCACACAC ACACTCACAT
  GGGCACACAC ATATAGGGGG GAATCCGGAT CCCAGGACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135581517	ENSMUSSNP117944	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320863863	CHEV_3_106902465	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52338923					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107006863 () rs orientation: forward

Symbol	Name	Function Class
A930002I21Rik	RIKEN cDNA A930002I21 gene	922 bp downstream
Cpgi13670	CpG island 13670	1370 bp proximal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	1599 bp upstream
Rr73810	regulatory region 73810	1766 bp distal
Rr77034	regulatory region 77034	1137 bp proximal
Tssr31156	transcription start site region 31156	1381 bp upstream
Tssr31157	transcription start site region 31157	1480 bp upstream
Tssr31158	transcription start site region 31158	1720 bp upstream