rs52339259 SNP Detail

Summary

• ID
  rs52339259
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTTCACT ACAAATCAGA CTTCAAGGTT TCCTTGGCAC
  TGTAGCTATG GCCTCCGGTT GTGACCACTA GTCATTGATA GCTCCATGAA AACATACACA
  A
  ACACACACAC ACACACACAC ACACACACAC ACACACACAA AGTCTTATAC ACACACGCCC
  AAACATACAC ATTCACACAC AGACACTCAC ATACTCATT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325417414	CHEV_17_52041590	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52339259					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209293 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	708 bp proximal
Rr370289	regulatory region 370289	1814 bp upstream
Rr405357	regulatory region 405357	1530 bp upstream
Tssr145177	transcription start site region 145177	1940 bp upstream
Tssr148690	transcription start site region 148690	1655 bp downstream
Tssr148691	transcription start site region 148691	1685 bp downstream