rs52340361 SNP Detail

Summary

• ID
  rs52340361
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGCGCGCG CGCGCCTTTG GAGGCCAGAG GACAACATTG GAAGCTGTTC ATCTTTTTTT
  W
  AAAAAATTTT AACGATGTGT GTGTGTGTGT ATGTCTGCGC CACATGGTGC TTATAGAGGG
  CAGAAGATAG ATAAATTTTC GGGACTGGGC CTCTCCTGCC A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131896	ENSMUSSNP5296801	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52340361					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889238 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	699 bp upstream
Cpgi19038	CpG island 19038	756 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1271 bp upstream
Tssr66503	transcription start site region 66503	1260 bp upstream
Tssr66504	transcription start site region 66504	1295 bp upstream
Tssr72351	transcription start site region 72351	1058 bp upstream
Tssr72352	transcription start site region 72352	950 bp upstream
Tssr72353	transcription start site region 72353	748 bp upstream
Tssr72354	transcription start site region 72354	711 bp upstream
Tssr72355	transcription start site region 72355	681 bp upstream
Tssr72356	transcription start site region 72356	527 bp upstream
Tssr72357	transcription start site region 72357	519 bp upstream
Tssr72358	transcription start site region 72358	494 bp upstream
Tssr72359	transcription start site region 72359	464 bp upstream
Tssr72360	transcription start site region 72360	427 bp upstream
Tssr72361	transcription start site region 72361	404 bp upstream