rs52340891 SNP Detail

Summary

• ID
  rs52340891
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49011967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTTTGTTTT TTGTTTTGTT TTGTTTTTGG TTTTGTTTTG
  TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTGGTTTG GTTTGGTTTG
  T
  TTTGGTTTGG TTTGGTTTGG TTTTTTGAGA CAGGGTTTCT CTGTGTTGCC CTGGCTGTCC
  TGGAACTCAC TCTGTAGACC AGGCTGGCCT CAAACTCAGA A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145722340	ENSMUSSNP6701885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52340891					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49011967 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	1373 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	1373 bp proximal