rs52341253 SNP Detail

Summary

• ID
  rs52341253
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114547492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTTTATC AAGAAAGAAG TGTAAGTAAG AGATGTCAGG
  GCTGAGAAGA GAGGAACTTG GTGATTGGAT AGGTGTGACT CTGACTCTCT CTCTCTCTCT
  G
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TAGGAGAAGC
  AGAGCCAAGA CTGACTCAGG GATACAGTAT GTGTGTTTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147270950	ENSMUSSNP682152	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52341253					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114547492 () rs orientation: forward

Symbol	Name	Function Class
Gm33655	predicted gene, 33655	1475 bp upstream
Rr597636	regulatory region 597636	1583 bp distal
Rr597637	regulatory region 597637	1044 bp distal
Rr597638	regulatory region 597638	1115 bp distal
Tssr42816	transcription start site region 42816	1563 bp upstream