rs52342298 SNP Detail

Summary

• ID
  rs52342298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:71659647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAAAAT GTGTGACTGC
  ACATCTGTGG AAAATTATAC ACCATATACC TGCTGGCCAA GCTAGCAGGA AAAGAAAGAT
  CATCACTATC TTATAGCACA AGGAGATTCT AAAAGCCACG TAAATTCCAC AGAACCATGA
  TTATATGACC ACACCAGGGG GCGCTCTTAA CACTGAAATG ATGGATGACA TTTTATTCTA
  Y
  TTAGTGGTCT CGGCTGGCTG AAAAGAAAGG GTTTTTTTGT TTGTTTGTTT TTGTCATTTG
  GCTTTTTGGT TGTTATTTTT TAACCTTTGT ATAACTATTT TTAAGTGCTC CTCTCTTGTA
  CGTGCTCACT GACAGCACAC AGATTTTCTT CTGCAGCCTA CTGTTAGCAC TAGGAAGCTA
  GTCTATCAAG GAAAGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61177168	NES16684235	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52342298					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61177168	NES16684235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:71659647 () rs orientation: forward

Symbol	Name	Function Class
Cox7b2	cytochrome c oxidase subunit 7B2	within coordinates
Rr114123	regulatory region 114123	within coordinates
Rr114124	regulatory region 114124	1554 bp proximal
Rr131591	regulatory region 131591	within coordinates
Tssr51282	transcription start site region 51282	352 bp downstream