rs52342828 SNP Detail

Summary

• ID
  rs52342828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100601533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG AGATCTGCAA ATTAGAGGGG
  W
  ATTTTCAGAT CCACGGGGAT TAGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135540415	ENSMUSSNP716363	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320849207	CHEV_3_100498140	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52342828					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100601533 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581889	regulatory region 581889	1966 bp distal
Rr581891	regulatory region 581891	1359 bp distal
Rr581892	regulatory region 581892	366 bp distal
Tssr30881	transcription start site region 30881	1747 bp downstream