rs52343105 SNP Detail

Summary

• ID
  rs52343105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140592342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTATAA CCCACCCCTC
  CCCTTTCTCT CGGTCTCATG TATCCCAGGC TGGCCCAGAC CACACGACAG AACCAAGGGC
  GACCTTGAAC TCCCCATCCT CCTCAGCACA GGGATGGCAG GCGTGTGCCA CCACACCCAG
  CTTTATAGGG TGCTGGGGGG GAAACCCAGG CTGCATGCCT GGTAGCAAGC TCTCTATCGA
  R
  TGAGCCACGT CCCCAGCCCC AAGGGATTGG CTAGTGTTTT TATTTTATTT TATTATTTAT
  TTATTTTAGA TGATATATTT TATCTGTGTA TGAATATCTT GCCTGCTTTT ATGTATGTCG
  ATGCTGTACT TGTGCGCCTG GTGCCTGAAG AGGTCAGAAG AGGGCATTGG ATACCTAGGA
  ACTGGAGTTT CGTGAGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147716754	ENSMUSSNP6399976	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52343105					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140592342 () rs orientation: forward

Symbol	Name	Function Class
Gm69366	predicted gene, 69366	within coordinates
Rr377299	regulatory region 377299	954 bp downstream