rs52344512 SNP Detail

Summary

• ID
  rs52344512
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12654466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTTTTTTTTT TTTTTTTTGG
  T
  TTTTCGAGAC AGGGTTTCTC TGTGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148341396	ENSMUSSNP3860046	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52344512					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12654466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	1141 bp proximal
Gm57203	predicted gene, 57203	within coordinates
Rps5	ribosomal protein S5	1757 bp upstream
Rr368230	regulatory region 368230	1526 bp upstream
Rr642402	regulatory region 642402	13 bp proximal
Rr642403	regulatory region 642403	1552 bp proximal
Rr642404	regulatory region 642404	1837 bp proximal
Tssr64485	transcription start site region 64485	1776 bp upstream
Tssr70626	transcription start site region 70626	1531 bp downstream