rs52344577 SNP Detail

Summary

• ID
  rs52344577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46038029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTGGTTCT GCCTGAACCT GTGCTGAGGG CCAGGGGGGC
  TGTTACTCCT TGTGGGTCTG AGGTGCAGGG TTAAGTTGAC TCAGATGGTG GCGCCTGCTA
  Y
  CTTCCTGGTT TTGTTTATTC TGTATACACA CACACACACA CACACACACA CACACACACA
  CTCTCACACA TACATTCAGA TTCACAAATA CACACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60259580	NES15753076	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	C	T	C	T		C	C	C	C		T
ss145695492	ENSMUSSNP2322342	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325403938	CHEV_17_45864052	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52344577					SNP	T	T	C	C	T	C	C	T	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259580	NES15753076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46038029 () rs orientation: forward

Symbol	Name	Function Class
Gm35456	predicted gene, 35456	within coordinates
Rr331487	regulatory region 331487	within coordinates
Rr331488	regulatory region 331488	1772 bp proximal
Rr339881	regulatory region 339881	628 bp distal