rs52345593 SNP Detail

Summary

• ID
  rs52345593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:69761192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGAGA CTCTCTGAGC
  GTGTTCACGA ATGGAGAGAA CTCTTGCCCC AACTCCAGCA GAACACTTCC CCAGTCTCTG
  TCTCTGTCTC TGTCTCTGTC TCTGTCTCTG TCTCTGTCTC TGTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC CCTGTTGATC TGTGTGTTTG ATCTGAGGTG TCCCTGGGAA
  Y
  TCTAGTGTCA CAGCTGCTTC CCCAGCCCAG CAGTTTCCCA ACCTCCACCC AAGGGCAGGC
  CCTCCCTTCT TTCCTGCCCT CCTTCCACCT GACAGGGACC ATAAATAACA GAGGCTCCCG
  GTGTTCCCAG CCGAGAACAA AGTTGAAAGT TTGCCTGCAG CTCCCGGCCA CTCCTGCTCC
  CGGGCCCTTC TTTGTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61285578	NES16896160	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52345593					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285578	NES16896160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69761192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ank3	ankyrin 3, epithelial			Intron
				mRNA-UTR
Rr433504	regulatory region 433504			1358 bp distal
Rr433505	regulatory region 433505			within coordinates
Rr433506	regulatory region 433506			782 bp proximal
Tssr93970	transcription start site region 93970			1211 bp downstream
Tssr93971	transcription start site region 93971			122 bp upstream
Tssr93972	transcription start site region 93972			404 bp upstream
Tssr93973	transcription start site region 93973			438 bp upstream
Tssr93974	transcription start site region 93974			467 bp upstream
Tssr93975	transcription start site region 93975			493 bp upstream
Tssr93976	transcription start site region 93976			616 bp upstream