rs52345966 SNP Detail

Summary

• ID
  rs52345966
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GGGAGGGTAT AGGGGACTTT
  A
  GGGATAGCAT TTGAAATGTA AATGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145508359	ENSMUSSNP1516908	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52345966					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1425 bp distal
Cpgi773	CpG island 773	1401 bp proximal
Gm57134	predicted gene, 57134	1383 bp upstream
Kdm5b	lysine demethylase 5B	1693 bp upstream
Rr367005	regulatory region 367005	1225 bp downstream
Rr367006	regulatory region 367006	1556 bp upstream
Rr418945	regulatory region 418945	1394 bp distal
Rr418948	regulatory region 418948	1032 bp distal
Rr418949	regulatory region 418949	1203 bp proximal
Tssr8904	transcription start site region 8904	1672 bp upstream
Tssr8905	transcription start site region 8905	1705 bp upstream
Tssr8906	transcription start site region 8906	1729 bp upstream
Tssr13798	transcription start site region 13798	1483 bp upstream