rs52346754 SNP Detail

Summary

• ID
  rs52346754
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128517970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC CCGCCCACGA GAGGAAAGGA
  A
  AAAAAAAAAA CCTCGGAGGA AAAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145462259	ENSMUSSNP4192816	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52346754					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128517970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	551 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	850 bp upstream
Rr396264	regulatory region 396264	1919 bp upstream
Tssr8536	transcription start site region 8536	721 bp upstream
Tssr8537	transcription start site region 8537	1044 bp upstream
Tssr8538	transcription start site region 8538	1072 bp upstream
Tssr8539	transcription start site region 8539	1086 bp upstream
Tssr13461	transcription start site region 13461	1771 bp upstream
Tssr13462	transcription start site region 13462	1601 bp upstream
Tssr13463	transcription start site region 13463	1501 bp upstream
Tssr13464	transcription start site region 13464	1459 bp upstream
Tssr13465	transcription start site region 13465	1446 bp upstream
Tssr13466	transcription start site region 13466	1375 bp upstream
Tssr13467	transcription start site region 13467	1333 bp upstream
Tssr13468	transcription start site region 13468	1247 bp upstream
Tssr13469	transcription start site region 13469	1193 bp upstream
Tssr13470	transcription start site region 13470	1103 bp upstream
Tssr13471	transcription start site region 13471	1031 bp upstream
Tssr13472	transcription start site region 13472	963 bp upstream
Tssr13473	transcription start site region 13473	948 bp upstream
Tssr13474	transcription start site region 13474	887 bp upstream
Tssr13475	transcription start site region 13475	866 bp upstream
Tssr13476	transcription start site region 13476	854 bp upstream
Tssr13477	transcription start site region 13477	788 bp upstream
Tssr13478	transcription start site region 13478	583 bp downstream
Tssr13479	transcription start site region 13479	612 bp downstream
Tssr13480	transcription start site region 13480	934 bp downstream