rs52346854 SNP Detail

Summary

• ID
  rs52346854
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153793515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTGCAGAGTT ATAACATGTG ACCAGGGCCC TGCCTTGATA
  GTGCAACCAT GCAGGAGGCA ATGACTTTGC TTGATCTGCT GCATTGGTTC CATGGTCTCT
  S
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTTCTCCC CCATCCCTCC
  CTCCCTCCTT CCCTCCCCTC CTCTTCTTCT CCTCCACAAT C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148011176	ENSMUSSNP2085035	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52346854					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153793515 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	Intron
Rr567759	regulatory region 567759	1269 bp proximal
Rr567760	regulatory region 567760	1477 bp proximal