rs52346920 SNP Detail

Summary

• ID
  rs52346920
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:28849641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGGGAAA GAGCTTGCCT GACAGGTATG TGGCTGAAGA
  TTCATCTCCA GTAACACCCA CTACATATAC ATATACTACA TGTATACACA TACACACACA
  G
  AGAGAGAGAC ACATACACAG ACATCCATAT ACAGACACAC ACACACAGCT CACAGAATCA
  GCAGCTTCAT GGGTGGTAGA ATGAAGAGAC AGGAGTGTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137506886	ENSMUSSNP1301988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52346920					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28849641 () rs orientation: forward

Symbol	Name	Function Class
Eipr1	EARP complex and GARP complex interacting protein 1	Intron
Rr387013	regulatory region 387013	886 bp downstream
Rr464343	regulatory region 464343	68 bp proximal
Tssr3815	transcription start site region 3815	1055 bp upstream