rs52348261 SNP Detail

Summary

• ID
  rs52348261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CAGAACCCCC TTCCACTCCC
  Y
  GTGGCTTCTG AGTTCCCCCA AAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149192249	ENSMUSSNP4026346	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52348261					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129308 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1712 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1975 bp upstream
Rr620033	regulatory region 620033	1950 bp distal
Rr620034	regulatory region 620034	1449 bp distal
Rr620035	regulatory region 620035	1304 bp distal
Rr620036	regulatory region 620036	429 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1993 bp downstream
Tssr48731	transcription start site region 48731	1964 bp downstream
Tssr48732	transcription start site region 48732	1930 bp downstream
Tssr48733	transcription start site region 48733	1879 bp downstream
Tssr48734	transcription start site region 48734	1633 bp downstream
Tssr48735	transcription start site region 48735	1506 bp downstream
Tssr48736	transcription start site region 48736	1483 bp downstream
Tssr48737	transcription start site region 48737	1302 bp downstream
Tssr48738	transcription start site region 48738	476 bp downstream
Tssr48739	transcription start site region 48739	465 bp downstream
Tssr48740	transcription start site region 48740	420 bp downstream
Tssr48741	transcription start site region 48741	381 bp downstream
Tssr53173	transcription start site region 53173	1965 bp upstream
Tssr53174	transcription start site region 53174	1907 bp upstream
Tssr53175	transcription start site region 53175	955 bp upstream
Tssr53176	transcription start site region 53176	838 bp upstream
Tssr53177	transcription start site region 53177	782 bp upstream
Tssr53178	transcription start site region 53178	750 bp upstream
Tssr53179	transcription start site region 53179	716 bp upstream
Tssr53180	transcription start site region 53180	672 bp upstream