rs52349483 SNP Detail

Summary

• ID
  rs52349483
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29151210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGTTGT GGTCTGAGTC
  TTCTCAGATG TTTCAATAAA CATGAGTCAT GGAATCAGAG GCCATAGGTT CAGTTTCTAC
  CAGAGCTCCG CCTACAGACG AGAGCTCCGC CTACAGACGA GAGCTCCGCC TACAGACGAG
  AGCTCCGCCT ACAGACGACT CTCCTGATTC TGAGGGCTCC AAAGCACCTC ACAGATGCTT
  G
  CTTGCTTGCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CCTTTTTTTG TTTTGAGGCT CTGTTTCAAC CTGAGTGGCT CCCTCCACCC CAGGCACAAG
  GTGACAAGGA CCACACACAC ATACCCTTGA ATACATTTCC TGCATGGATG GCCCTTGAGT
  AGATACAGCC CCCAGGAGAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145425706	ENSMUSSNP1997869	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52349483					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29151210 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Pxt1	peroxisomal, testis specific 1	1750 bp downstream
Rr392487	regulatory region 392487	789 bp downstream
Rr524716	regulatory region 524716	1608 bp distal
Rr524717	regulatory region 524717	1683 bp distal
Rr524718	regulatory region 524718	731 bp distal
Rr524719	regulatory region 524719	964 bp distal
Rr524720	regulatory region 524720	within coordinates