rs52349656 SNP Detail

Summary

• ID
  rs52349656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90909147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAG TATTACTATT TGGGCCACTA
  M
  CTATATATTT TAGATAGTAT ATATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148817127	ENSMUSSNP1629166	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321608251	CHEV_5_91190314	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52349656					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90909147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1475 bp distal
Cxcl5	C-X-C motif chemokine ligand 5	within coordinates
Gm72413	predicted gene, 72413	within coordinates
Rr614400	regulatory region 614400	1900 bp distal
Tssr47178	transcription start site region 47178	1921 bp downstream