rs52349712 SNP Detail

Summary

• ID
  rs52349712
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGCAGTA ATAGCTACCC GTTTTATTGG TTACTTTTTC
  TTCTTTCTTT TTTCTTTCTT TCTTCCTTCC TTCCTTTCTT TCTATTTTTT TTTTTTTGAG
  G
  TTTCACTTTG CTTGCCTAGA ACTCATATCT GTCTGTTTCT GCTTCTAGAG TGTTGGGATT
  AACGATATGT GACACCACAA CCACCATTAT TTATTTGTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147525997	ENSMUSSNP4456961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321346961	CHEV_4_133900339	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52349712					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	636 bp distal
Rr601645	regulatory region 601645	705 bp distal
Rr601646	regulatory region 601646	383 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	1270 bp downstream
Tssr39549	transcription start site region 39549	1213 bp downstream
Tssr39550	transcription start site region 39550	918 bp downstream
Tssr39551	transcription start site region 39551	889 bp downstream
Tssr39552	transcription start site region 39552	816 bp downstream
Tssr39553	transcription start site region 39553	744 bp downstream
Tssr39554	transcription start site region 39554	720 bp downstream
Tssr39555	transcription start site region 39555	515 bp downstream
Tssr39556	transcription start site region 39556	400 bp downstream