rs52350784 SNP Detail

Summary

• ID
  rs52350784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTAACCAGA GCAATTTGTA GAAGGCAACA ATTTATTGTG
  GCTTAAGATT CCAGAGGGAT AAGAGTCCAT CATTGTGAGG AGCCAGGCAG CAGGTGGCAG
  M
  AAACCAGGAA GCTGAGACAC CACAGCTTGA AACACACATG CATGTGCAAG CAAGAACAAA
  CATACACACA CATACACATG CACTCACAAG TGCGAGTGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149092898	ENSMUSSNP1921190	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322575042	CHEV_8_35169975	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52350784					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1194 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1425 bp upstream
Rr661952	regulatory region 661952	within coordinates
Rr661953	regulatory region 661953	414 bp proximal
Rr661954	regulatory region 661954	921 bp proximal
Rr661955	regulatory region 661955	930 bp proximal
Rr661956	regulatory region 661956	1605 bp proximal
Tssr80889	transcription start site region 80889	841 bp downstream
Tssr80890	transcription start site region 80890	895 bp downstream
Tssr80891	transcription start site region 80891	1522 bp downstream
Tssr80892	transcription start site region 80892	1590 bp downstream
Tssr80893	transcription start site region 80893	1871 bp downstream