rs52351052 SNP Detail

Summary

• ID
  rs52351052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41182594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTGTG AACATCTGTG
  TGTGCTTCTG CATATATATG TATATATGTA TATGTGTGTA TGTATATATA TATATGAGAG
  AGAGAGAGAG AGAGAGAAAG AAAATATATA TCTTTGTGTG TATGAGCCTC TGTGTATATG
  TGCCTGTATG TATCTGTATG AGAGTAAAAT TGAGCCTATG TGTATGTACC CCAAAATGTG
  Y
  ATATAAGATT GTGTGTGTAT GTGTATGTCT GAGTGCATGT GTGTGAGTGG ATGTGTGTCT
  GTGTGTGTAA GGATGGGAAA GAAGGCTGCC ATTACTCTCT ATGTTGAAAC TTAGGTGAAT
  CTCGGGGATT AGGTGTTACT GCTCACAGTG GCTAAGAAAC TGCACATCCT AAAATCTGCA
  CACAGTTCTA AATTGAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60399183	NES15898919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs52351052					SNP	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399183	NES15898919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41182594 () rs orientation: forward

Symbol	Name	Function Class
Gm64942	predicted gene, 64942	within coordinates
Rr575921	regulatory region 575921	249 bp proximal
Rr575922	regulatory region 575922	487 bp proximal