rs52351852 SNP Detail

Summary

• ID
  rs52351852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TTTCTTTTTT CTTTCTTTCT
  Y
  CCTTCCTTCC TTTCTTTCTA TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147525983	ENSMUSSNP2064321	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321346960	CHEV_4_133900302	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52351852					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	599 bp distal
Rr601645	regulatory region 601645	668 bp distal
Rr601646	regulatory region 601646	420 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	1233 bp downstream
Tssr39549	transcription start site region 39549	1176 bp downstream
Tssr39550	transcription start site region 39550	881 bp downstream
Tssr39551	transcription start site region 39551	852 bp downstream
Tssr39552	transcription start site region 39552	779 bp downstream
Tssr39553	transcription start site region 39553	707 bp downstream
Tssr39554	transcription start site region 39554	683 bp downstream
Tssr39555	transcription start site region 39555	478 bp downstream
Tssr39556	transcription start site region 39556	363 bp downstream