rs52351967 SNP Detail

Summary

• ID
  rs52351967
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TCTTTCAGTT ACTCTTTTTT
  G
  GGGGGGGTTT CTTTTTTGTA ATTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146183790	ENSMUSSNP2846196	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320123189	CHEV_1_174134899	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52351967					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1440 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	within coordinates
Rr423484	regulatory region 423484	208 bp proximal
Rr423485	regulatory region 423485	709 bp proximal
Tssr294	transcription start site region 294	1860 bp downstream
Tssr295	transcription start site region 295	1912 bp downstream
Tssr296	transcription start site region 296	1988 bp downstream
Tssr15164	transcription start site region 15164	1886 bp downstream
Tssr15165	transcription start site region 15165	1916 bp downstream