rs52353683 SNP Detail

Summary

• ID
  rs52353683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:105148191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA TGTGCACCAC TGAGCATGTG
  W
  GAAGGACAGA AGACAACTTC CAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134261391	ENSMUSSNP7217753	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325907941	CHEV_X_103299924	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52353683					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:105148191 () rs orientation: forward

Symbol	Name	Function Class
Atp7a	ATPase, copper transporting, alpha polypeptide	within coordinates
Rr2535	regulatory region 2535	810 bp proximal
Rr8987	regulatory region 8987	610 bp proximal
Tssr161765	transcription start site region 161765	573 bp upstream