rs52354221 SNP Detail

Summary

• ID
  rs52354221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103290593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG CCTTCTGGTC TATACACACA
  Y
  ACACACACAC ACACACACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136877672	ENSMUSSNP865964	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52354221					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103290593 () rs orientation: forward

Symbol	Name	Function Class
D9Mgc25	DNA segment, Chr 9, MRC UK Mouse Genome Centre 25	895 bp proximal
D9Mit242	DNA segment, Chr 9, Massachusetts Institute of Technology 242	within coordinates
Gm47328	predicted gene, 47328	within coordinates
Gm69201	predicted gene, 69201	within coordinates
Rr198513	regulatory region 198513	993 bp distal
Rr198514	regulatory region 198514	593 bp distal
Rr207103	regulatory region 207103	within coordinates