rs52355564 SNP Detail

Summary

• ID
  rs52355564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGCAAT CCATGCCTGT
  AATTCCAGTG GTCAGGGTCG GGGAGGGGGA ACCAGGAAGA TCCTGGGGCT CTCTGGCTAA
  ATCAGTGGGC TCCAGGTTCA CTGGGAGACC CGGGCTCAAA AAGTAAGGTG GAGAAGCAAT
  GAGAAAAAAC CCTTGATGTC AACCTCTGGC CTCTGCATGA ATGTGCATCA GGTGGTGGAA
  R
  CAAGTGTTCA ACTGTGTGCA CATGTGCACA CACACACACA CACGCACAAA CACACACATA
  CACAAACACA TGCACAAGCA TGCACCCCCA CATAAATACA ACGCTTTTTT TTGTGTTAAA
  CATAGCTGAA ATTTAAAAGT TTTGCATTGG TGGATCTGAG ATTATAGTTC ATGGAAGAAC
  ACTTGCTTAG CTCCTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132681511	ENSMUSSNP2588360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323821016	CHEV_11_96405615	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52355564					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435127 () rs orientation: forward

Symbol	Name	Function Class
Rr455428	regulatory region 455428	1256 bp distal
Skap1	src family associated phosphoprotein 1	Intron
Tssr104542	transcription start site region 104542	1867 bp downstream
Tssr104543	transcription start site region 104543	418 bp upstream
Tssr104544	transcription start site region 104544	1072 bp upstream
Tssr104545	transcription start site region 104545	1125 bp upstream
Tssr104546	transcription start site region 104546	1133 bp upstream
Tssr104547	transcription start site region 104547	1175 bp upstream
Tssr104548	transcription start site region 104548	1269 bp upstream
Tssr104549	transcription start site region 104549	1282 bp upstream
Tssr104550	transcription start site region 104550	1340 bp upstream
Tssr104551	transcription start site region 104551	1368 bp upstream
Tssr104552	transcription start site region 104552	1389 bp upstream