rs52355588 SNP Detail

Summary

• ID
  rs52355588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108693703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGTGT ATATTTAAGT
  CAGAGAGTGC AATAGGATAG ATCTACGACA GATTAATAAA AGAATTTCAG CTTATATAAT
  ACTGTGGTAG ATTGGGAAGT ACAGACTGAG GAGGGTAAGG GCGCTGGCAT CTACCTGAAT
  TAGGAGGGTG AGAAAAAGCT TTTCTTTTCT TTCTTTCTTA CTTTTTTTTT GGGGGGGGGG
  K
  GAGAGACAGG GTTTCTCTGC AGCCCAGGTT GTCCTGGAAC TCACTCTGTA GACCAGGCTG
  GCTTCGAACT CAGAAATCCG TCTGCCTCTG CCTCCTGAGT GCTAGGATTA AAGGTGTGTG
  CCACCATGCC TGGCAAAGCT TTTTCTTTCT TTTCTTTTTT CTTTTGAGAA AGAAGTTTTT
  CTAAGGTGAT ATGTGGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147191141	ENSMUSSNP1035062	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321252875	CHEV_4_108509111	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52355588					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108693703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14565	CpG island 14565	1366 bp distal
Rr376990	regulatory region 376990	1439 bp downstream
Rr597226	regulatory region 597226	1895 bp distal
Rr597227	regulatory region 597227	1463 bp proximal
Tssr38313	transcription start site region 38313	1889 bp downstream
Tssr38314	transcription start site region 38314	1801 bp downstream
Tssr38315	transcription start site region 38315	1755 bp downstream
Tssr38316	transcription start site region 38316	1699 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates