rs52356556 SNP Detail

Summary

• ID
  rs52356556
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121265737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT GTTTTTTTGT TTTGTTTTGT
  G
  TTGTTTTTTG TTTTTCGAGA CAGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147386049	ENSMUSSNP1741283	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52356556					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121265737 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	115 bp distal
Rr563822	regulatory region 563822	194 bp distal
Tssr19765	transcription start site region 19765	1719 bp downstream
Tssr19766	transcription start site region 19766	1245 bp downstream
Tssr19767	transcription start site region 19767	655 bp upstream
Tssr19768	transcription start site region 19768	1099 bp upstream