rs52357269 SNP Detail

Summary

• ID
  rs52357269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128535020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GGAAGAGGAG GAAGAGGAGG
  R
  GGAAGAGGAA ACATCAGAAG GAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145462774	ENSMUSSNP1094268	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss319965309	CHEV_1_130503860	CHEVERUD	SCREENING_POP	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52357269					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128535020 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	1224 bp downstream
Rr396265	regulatory region 396265	969 bp downstream
Rr417790	regulatory region 417790	974 bp distal
Rr417791	regulatory region 417791	687 bp proximal
Tssr13482	transcription start site region 13482	691 bp downstream