rs52357560 SNP Detail

Summary

• ID
  rs52357560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:121746429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCAGAA AGTTTGTTGT
  TGTTACTGTT GTTGTTGCTG TTGTTGTTTT GGGACAGGTT TCCTGTGTAT CCCTGGCTGT
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTCC TGGAATTATT TTATTTTATT TTATTTCATT TTATTGGTTT TTCGAGACAG
  R
  GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCACTCTG TAGACCAGGC TGGCCTTGAA
  CTCAGAAATC CTTTTGCCTC TGCCTCCTAA GTGCTGGGAT CAAAGGCCTG CACCACTGCC
  CGGCACCACC CTGGAATTCT TTTTTTTTTT TTTTAAATAT TTATTTATTT AATGTAAGTA
  CACTGTAGCT GTCTTCAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss145833524	ENSMUSSNP4432829	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs52357560					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:121746429 () rs orientation: forward

Symbol	Name	Function Class
Dctn5	dynactin 5	within coordinates
Gm15489	predicted gene 15489	1082 bp downstream
Rr153390	regulatory region 153390	172 bp proximal
Tssr68863	transcription start site region 68863	1081 bp upstream