rs52357748 SNP Detail

Summary

• ID
  rs52357748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46138721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGCCGG AGGAGGCGGC CGCAATTGGA CTTGCAGACG
  CCGGCCTTCC ACTGCGGAGC CCATCCGGTG CCCCTCTGCA CGCGCTTCCG GCAGGCGTCG
  Y
  AAGCGAGTGC GCCTGCGCGC CGCTCAGTCC GCGCGCCTCG CCGCTGACCG CGCACCGGCC
  GGCCGGCAGC CCGACGGTTC TGGGGTTGCA GGCGGCTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146261776	ENSMUSSNP1494685	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321104091	CHEV_4_46151593	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52357748					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46138721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	within coordinates
Ncbp1	nuclear cap binding protein subunit 1	11 bp upstream
Rr591548	regulatory region 591548	294 bp distal
Rr591549	regulatory region 591549	98 bp distal
Rr591550	regulatory region 591550	within coordinates
Rr591551	regulatory region 591551	within coordinates
Tssr37109	transcription start site region 37109	200 bp downstream
Tssr37110	transcription start site region 37110	163 bp downstream
Tssr37111	transcription start site region 37111	127 bp downstream
Tssr37112	transcription start site region 37112	within coordinates
Tssr37113	transcription start site region 37113	100 bp upstream
Tssr41557	transcription start site region 41557	346 bp upstream
Tssr41558	transcription start site region 41558	257 bp upstream
Tssr41559	transcription start site region 41559	within coordinates
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	27 bp upstream