rs52358442 SNP Detail

Summary

• ID
  rs52358442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAGATT CTGAGGCCTT
  GTCTATAAAG TCTGAGCGCC ACTGGTCTTT CTTTTTAAAG TTCTCTTTCA ACCTTATAGT
  GAGGAAATTC ATCTTTCTTA AAACTTGTCT GTATTTATTT ATCCATTAGC ATAACTTTAG
  AGTATATGGA TTCAACCTGA CTTTATTATT ATTTAGCATA TTCTTTAATG TAGAGATGGT
  R
  GATTTTTTTT TTTTTATTTA GGAAATCGGC TAGCTTTTCG TTAATTTATT TACATTTTCT
  TTTTTTTTTA TTTGCATGAG GTGGCTAGTT AACTTTATAC AGTATAGATA TTTTAATGCT
  CTTCTTGCTC TAATGTAATG GGTTCATTAA AAATGTGTAC AATCTAGAGT AAAAACAACC
  AAAGGCCTAG GAGAAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147206150	ENSMUSSNP5745680	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52358442					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	894 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1073 bp upstream
Rr397176	regulatory region 397176	784 bp upstream
Rr562509	regulatory region 562509	583 bp proximal
Rr562510	regulatory region 562510	1084 bp proximal
Rr562511	regulatory region 562511	1189 bp proximal
Rr562512	regulatory region 562512	1228 bp proximal
Rr562513	regulatory region 562513	1616 bp proximal
Tssr19307	transcription start site region 19307	997 bp upstream
Tssr19308	transcription start site region 19308	1022 bp upstream
Tssr19309	transcription start site region 19309	1065 bp upstream
Tssr19310	transcription start site region 19310	1105 bp upstream
Tssr19311	transcription start site region 19311	1149 bp upstream