rs52358709 SNP Detail

Summary

• ID
  rs52358709
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89258551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTAAGT CTTTTTTAAA
  AAATCTCTCC GGGTGGTGGT GGTGCACACC TTTAATCCCA GTACTTGGGA GGCAGAGGCA
  GGTGGATTTC TGAGTTTGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG
  CTACACAGAG AAACCCTGTC TCGAAAAACA AACAAACAAA CAAAAAACTC AACCCCCCCC
  C
  AAAAAAAATC TCAGAAAGAT GGTGTAACTT TCCTAAGTCA GATCTGAGTC AAACCTGGCA
  GGAACCAAGT CCCAAGCTTT GTGGCCATTC CACAGTCTCA CTTTCCGAAT ACCCTCTTCA
  TACAGTTGCC AGGAATTCTT AAGAGCAGAG CTGGGCTTGC CCTTCGAGCG CTCAGAGGTC
  TGTTTCTTCC CAGCCTTGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135474352	ENSMUSSNP3992258	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52358709					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89258551 () rs orientation: forward

Symbol	Name	Function Class
Adam15	ADAM metallopeptidase domain 15	962 bp upstream
Cpgi13424	CpG island 13424	505 bp distal
Dcst1	DC-STAMP domain containing 1	Intron
Gm66683	predicted gene, 66683	196 bp downstream
Rr397787	regulatory region 397787	1001 bp downstream
Rr580054	regulatory region 580054	1296 bp distal
Rr580055	regulatory region 580055	1178 bp distal
Tssr34120	transcription start site region 34120	1285 bp upstream
Tssr34121	transcription start site region 34121	1243 bp upstream