rs52359332 SNP Detail

Summary

• ID
  rs52359332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164287751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGCTG GAGTTTGATG
  GTTTCTGCCT ATAATCCCAG ACTGGAGATA GGCAGGAGGA TTACACATCT GAGGAAGAAA
  GAAAAGTGAG TAAGAGGACT CTTAAGACTG ATGCGGTGAC CATTCCTCAT AGCCAGTGTA
  CCTCAAACCC CCAGAACAGT TTGCAAACAG TTCATCGTGG CAGGTTTTAA ATCAGAACTT
  Y
  CTTTACTATT GAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAGAGAAA GAAAGAAAGA AGAGGAAAAG AAAAAGGAAA GGAAAGAAAA
  GAAAAGAAAA GAAAAGAAAA GAAAAGTGCT GCCCCTTAGC TGTCGACTTG TATGATAAAT
  GCCAGTTATA CTGGGAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978957	ENSMUSSNP6093485	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52359332					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164287751 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	1827 bp upstream
Cpgi945	CpG island 945	1106 bp distal
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Gm70492	predicted gene, 70492	1436 bp upstream
Rr422213	regulatory region 422213	1838 bp distal
Rr422214	regulatory region 422214	1922 bp distal
Rr422215	regulatory region 422215	1667 bp distal
Rr422216	regulatory region 422216	1758 bp distal
Rr422217	regulatory region 422217	1447 bp distal
Rr422218	regulatory region 422218	946 bp distal
Rr422219	regulatory region 422219	237 bp proximal
Rr422220	regulatory region 422220	1703 bp proximal
Rr422221	regulatory region 422221	1857 bp proximal
Tssr9788	transcription start site region 9788	1652 bp downstream
Tssr9789	transcription start site region 9789	1635 bp downstream
Tssr14747	transcription start site region 14747	1819 bp upstream
Tssr14748	transcription start site region 14748	1445 bp upstream
Tssr14749	transcription start site region 14749	657 bp downstream
Tssr14750	transcription start site region 14750	672 bp downstream