rs52360075 SNP Detail

Summary

• ID
  rs52360075
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127128006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA GCTCGCTCTC CTCTCTCGCT
  S
  AGGCAGTGAC GCAAGCTGGA AGGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss60943873	NES16183261	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	G	G	G	G	G		G	G	G
ss133629722	ENSMUSSNP5596704	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321941144	CHEV_6_127101061	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs52360075					SNP	C	G	G	G	C	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60943873	NES16183261	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127128006 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18033	CpG island 18033	1482 bp distal
Cpgi18034	CpG island 18034	within coordinates
Cpgi18035	CpG island 18035	592 bp proximal
Cpgi18036	CpG island 18036	1717 bp proximal
Gm56941	predicted gene, 56941	2000 bp downstream
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	1394 bp upstream
Tssr59020	transcription start site region 59020	1618 bp downstream
Tssr59021	transcription start site region 59021	800 bp downstream
Tssr59022	transcription start site region 59022	1526 bp upstream
Tssr63371	transcription start site region 63371	1416 bp upstream
Tssr63372	transcription start site region 63372	1393 bp upstream
Tssr63373	transcription start site region 63373	1380 bp upstream
Tssr63374	transcription start site region 63374	367 bp upstream
Tssr63375	transcription start site region 63375	29 bp upstream
Tssr63376	transcription start site region 63376	4 bp upstream
Tssr63377	transcription start site region 63377	1 bp downstream
Tssr63378	transcription start site region 63378	1415 bp downstream