rs52361558 SNP Detail

Summary

• ID
  rs52361558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19307774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGAGA CAAGAGAATA
  GTCAAAGTTC AAGCGAGGCC TGACAACCTG TGAAAAGGGG CATGGGAGCG GGGCAGGGCG
  GAGTGGGGGA AGGAAAGAAG AAAGAGTAGT GGCTCACACC TGTAATCTCA GATCTTGGCA
  GCCGGAGGCA GGAAGATCGG GATCAATTAG AGATAGAATA AGAGAGAGAA AGGGGTGGGG
  R
  ACGAGGGAGG GACGCAGAAG GAGGAGGAGG GGAAAAAAGA AGCAGAAAAA GCATAAGAGG
  TTTCCTATTA GCCGCTTTGG AGGCACACCT GTATTCCACC CCTCCCCGTC TCCGCCTCTA
  GGTACCAGGA AAGGGGCTTA CGGAATGCTG CCGCTGGGAT GTACCCAGCC CACTTTGCAA
  CCTTTGTTTA AAAATGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148479109	ENSMUSSNP44291	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52361558					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19307774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	183 bp distal
Gemin7	gem nuclear organelle associated protein 7	Intron
Rr380485	regulatory region 380485	within coordinates
Rr643193	regulatory region 643193	892 bp distal
Rr643194	regulatory region 643194	within coordinates
Rr643195	regulatory region 643195	191 bp distal
Tssr70933	transcription start site region 70933	486 bp upstream
Tssr70934	transcription start site region 70934	472 bp upstream
Tssr70935	transcription start site region 70935	446 bp upstream
Tssr70936	transcription start site region 70936	4 bp upstream