rs52362653 SNP Detail

Summary

• ID
  rs52362653
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAATTGCAAA TAAAAGATAG ATAGATAGAT AGATAGATAG
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATACGTAG GTAGGTAGGT AGGTAGGTAG
  A
  TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TGGGACAGGA CAGCAGCCAA
  GGGTCAGGGC TCAGGATTGG TGAGCAGGGT GGGCTCTGGA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144562822	ENSMUSSNP2884824	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52362653					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338884 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	within coordinates
Rr623254	regulatory region 623254	1722 bp distal
Rr623255	regulatory region 623255	1221 bp distal
Rr623256	regulatory region 623256	502 bp distal
Rr623257	regulatory region 623257	567 bp proximal
Tssr49499	transcription start site region 49499	506 bp downstream
Tssr49500	transcription start site region 49500	1080 bp upstream
Tssr49501	transcription start site region 49501	1112 bp upstream