rs52362867 SNP Detail

Summary

• ID
  rs52362867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9813832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGCCTC ACCACCCTGA
  TATGGGAACC CACTCTGATG TCAGAGAGCC GGGAGCTTAA AATCAGAAAC ATATATACTC
  TCTCCAAGCA CAGACACGCG TGCGCGCGCG CATACACACA CATACACACA CAGACGCGCA
  CCCACAGACA CACATACACA CTTGCTGCTT CCTTCTCTAA GTTGTTCGAG ACAAAACGTA
  R
  CCCTGTGGTT GCCTCTTCTA AGTCACCAGA ACGGATAAGC CAAGAGCCTG GGGCTAACTG
  GCTGTGAAAA CTGACTGGCT CCAATTCTAG CAGCTGGGCA TGAGGCTCCT TGTTAGATGT
  CTACATTTGA CCTTTGTACG GTCAGTCACT TGAATCCCAA CACCTGTCTC TGCCTTTCTT
  CCCTTCCCTT GATGCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63642038	NES17050198	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52362867					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63642038	NES17050198	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9813832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Gm30668	predicted gene, 30668	1241 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	408 bp upstream
Tssr139893	transcription start site region 139893	1401 bp upstream
Tssr139894	transcription start site region 139894	956 bp upstream
Tssr139895	transcription start site region 139895	880 bp upstream
Tssr139896	transcription start site region 139896	664 bp upstream
Tssr139897	transcription start site region 139897	625 bp upstream
Tssr139898	transcription start site region 139898	596 bp upstream
Tssr139899	transcription start site region 139899	568 bp upstream
Tssr139900	transcription start site region 139900	525 bp upstream
Tssr139901	transcription start site region 139901	449 bp upstream
Tssr139902	transcription start site region 139902	419 bp upstream
Tssr139903	transcription start site region 139903	387 bp upstream
Tssr139904	transcription start site region 139904	299 bp upstream
Tssr139905	transcription start site region 139905	243 bp upstream
Tssr139906	transcription start site region 139906	150 bp upstream