rs52363256 SNP Detail

Summary

• ID
  rs52363256
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTTTC TCGTGTTTTT
  CCATTTATAG ACCCTTTTCC ACCTAAGAAA TTTTTACATG GCATATAGAA CAGGTATACA
  AACAAGGCAT ATAAAACAGG TATACAAACC AAACTATTTT AAAGTCGTCC TTTAGCACCA
  TATTCTTTTT TAATTTAATT TTATTTGTAA TTCATTTTTT ACACTCCATA TTCCATTCAC
  T
  GCCCCGCCCC TCCCACCCTC CAACTTCTCC ACATCCCACA CCCCCTTCCC ACCACGCCCA
  TCTCCACATG GAGGCCCCCA CCCTTCACCC CAAGAATCAT ATTTTTAAAA GACGAAAGCA
  AGCTTGCATG TTAATGAGTC AGATGTGCTC ATTTTTTTTA TAACCATTTA TTTTTACATA
  AAGAATTACA TCTTGGCTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss145238557	ENSMUSSNP5121521	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs52363256					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574180 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1708 bp upstream
Gm59893	predicted gene, 59893	1182 bp downstream
Rr369776	regulatory region 369776	1855 bp upstream
Rr395952	regulatory region 395952	551 bp upstream
Rr486369	regulatory region 486369	1696 bp distal
Rr486370	regulatory region 486370	287 bp proximal
Rr486371	regulatory region 486371	387 bp proximal
Rr486372	regulatory region 486372	1229 bp proximal
Rr486373	regulatory region 486373	1730 bp proximal
Tssr121117	transcription start site region 121117	502 bp upstream
Tssr121118	transcription start site region 121118	581 bp upstream
Tssr124051	transcription start site region 124051	393 bp downstream