rs52363523 SNP Detail

Summary

• ID
  rs52363523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155926010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGA GGTTACAGAG GATCGTGAGT
  R
  TGTCCCTTCC TCTCCTTCGC TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148117668	ENSMUSSNP2952731	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321443284	CHEV_4_155215662	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52363523					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155926010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1375 bp upstream
Rr398927	regulatory region 398927	69 bp downstream
Rr606589	regulatory region 606589	1817 bp distal
Rr606590	regulatory region 606590	885 bp distal
Rr606591	regulatory region 606591	448 bp distal
Rr606592	regulatory region 606592	within coordinates
Rr606593	regulatory region 606593	385 bp distal
Tssr40724	transcription start site region 40724	1869 bp downstream
Tssr40725	transcription start site region 40725	1849 bp downstream
Tssr40726	transcription start site region 40726	1791 bp downstream
Tssr40727	transcription start site region 40727	1729 bp downstream
Tssr40728	transcription start site region 40728	1713 bp downstream
Tssr40729	transcription start site region 40729	445 bp downstream
Tssr40730	transcription start site region 40730	415 bp downstream
Tssr40731	transcription start site region 40731	386 bp downstream
Tssr40732	transcription start site region 40732	378 bp downstream
Tssr40733	transcription start site region 40733	77 bp downstream
Tssr40734	transcription start site region 40734	1498 bp upstream
Tssr44980	transcription start site region 44980	498 bp upstream
Tssr44981	transcription start site region 44981	449 bp upstream